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SourceForge net binary alignment map (bam) format
Binary Alignment Map (Bam) Format, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bam+binary+alignment/sequence+alignment+map++sam++tools/pmc10085793-59-10-22
Average 90 stars, based on 1 article reviews
binary alignment map (bam) format - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

other:

Article Title: A missense mutation in Pitx2 leads to early-onset glaucoma via NRF2-YAP1 axis
Article Snippet: High-quality reads were mapped to the mouse genome (GRCm38, mm10) and the resulting alignment was sorted by coordinates and further converted to binary alignment map (BAM) format by Picard v1.95 SortSam utility ( http://picard.sourceforge.net ).

Article Title: An ENU-induced mutation in the mouse Rnf212 gene is associated with male meiotic failure and infertility
Article Snippet: The resulting alignment was sorted by coordinates and further converted to a binary alignment map (BAM) format by Picard v 1.8.4- SortSam utility ( http://picard.sourceforge.net ).

Article Title: Genomes of the Mouse Collaborative Cross
Article Snippet: The alignment was sorted by coordinates and converted to binary alignment map (BAM) format by Picard ( http://picard.sourceforge.net ) SortSam utility.

Article Title: Molecular pathogenesis of congenital diaphragmatic hernia revealed by exome sequencing, developmental data, and bioinformatics
Article Snippet: The alignment files were converted from a sequence alignment map (SAM) format to a sorted, indexed, binary alignment map (BAM) file (SAMtools version 0.1.19; samtools.sourceforge.net ) ( 36 ).

Article Title: Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases
Article Snippet: Reads were aligned to human reference build 36 ( ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/ARCHIVE/BUILD.36.3/special_requests/assembly_variants/ ; BWA 0.5.5, http://sourceforge.net/projects/bio-bwa/ ), merged into a single binary alignment map (BAM) file, with duplicate reads removed using Picard 1.07 ( http://broadinstitute.github.io/picard/ ) by the established pipeline, as previously reported [ ].

Article Title: Protein coding variation in the J:ARC and J:DO outbred laboratory mouse stocks provides a molecular basis for distinct research applications
Article Snippet: The resulting alignment was sorted by coordinates and converted to binary alignment map (BAM) format by Picard v 2.8.1- SortSam utility ( http://picard.sourceforge.net ).

Software:

Article Title: Using VarScan 2 for Germline Variant Calling and Somatic Mutation Detection
Article Snippet: .. Necessary Resources Software SAMtools ( http://samtools.sourceforge.net ) for generating the input mpileup Data Aligned sequencing data in binary alignment map (BAM) format, with one BAM file each for father, mother, and child. ..

Article Title: Transcriptome analysis of grapevine under salinity and identification of key genes responsible for salt tolerance.
Article Snippet: The negative effects of soil salinity towards grape yield depend upon salt concentration, cultivar type, developmental stage, and rootstock.. Thompson Seedless variety of grape plant is considered moderately sensitive to salinity when grown upon its own root stock.. In recent epoch, identification of key genes responsive to salinity offers hope to generate salinity-tolerant crop plants by their overexpression through genetic manipulation.

Sequencing:

Article Title: Using VarScan 2 for Germline Variant Calling and Somatic Mutation Detection
Article Snippet: .. Necessary Resources Software SAMtools ( http://samtools.sourceforge.net ) for generating the input mpileup Data Aligned sequencing data in binary alignment map (BAM) format, with one BAM file each for father, mother, and child. ..

Article Title: Transcriptome analysis of grapevine under salinity and identification of key genes responsible for salt tolerance.
Article Snippet: The negative effects of soil salinity towards grape yield depend upon salt concentration, cultivar type, developmental stage, and rootstock.. Thompson Seedless variety of grape plant is considered moderately sensitive to salinity when grown upon its own root stock.. In recent epoch, identification of key genes responsive to salinity offers hope to generate salinity-tolerant crop plants by their overexpression through genetic manipulation.



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